Comprehensive analysis of the three-amino-acid-loop-extension gene family and its tissue-differential expression in response to salt stress in poplar.
Identifieur interne : 000A60 ( Main/Exploration ); précédent : 000A59; suivant : 000A61Comprehensive analysis of the three-amino-acid-loop-extension gene family and its tissue-differential expression in response to salt stress in poplar.
Auteurs : Kai Zhao [République populaire de Chine] ; Xuemei Zhang [République populaire de Chine] ; Zihan Cheng [République populaire de Chine] ; Wenjing Yao [République populaire de Chine] ; Renhua Li [République populaire de Chine] ; Tingbo Jiang [République populaire de Chine] ; Boru Zhou [République populaire de Chine]Source :
- Plant physiology and biochemistry : PPB [ 1873-2690 ] ; 2019.
Descripteurs français
- KwdFr :
- Arabidopsis (génétique), Clonage moléculaire (MeSH), Gènes de plante (génétique), Gènes de plante (physiologie), Phylogenèse (MeSH), Populus (génétique), Populus (métabolisme), Populus (physiologie), Protéines à homéodomaine (génétique), Protéines à homéodomaine (physiologie), Réaction de polymérisation en chaine en temps réel (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Stress salin (MeSH), Techniques de double hybride (MeSH), Transcriptome (génétique), Transcriptome (physiologie).
- MESH :
- génétique : Arabidopsis, Gènes de plante, Populus, Protéines à homéodomaine, Transcriptome.
- métabolisme : Populus.
- physiologie : Gènes de plante, Populus, Protéines à homéodomaine, Transcriptome.
- Clonage moléculaire, Phylogenèse, Réaction de polymérisation en chaine en temps réel, Régulation de l'expression des gènes végétaux, Stress salin, Techniques de double hybride.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Cloning, Molecular (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), Genes, Plant (physiology), Homeodomain Proteins (genetics), Homeodomain Proteins (physiology), Phylogeny (MeSH), Populus (genetics), Populus (metabolism), Populus (physiology), Real-Time Polymerase Chain Reaction (MeSH), Salt Stress (MeSH), Transcriptome (genetics), Transcriptome (physiology), Two-Hybrid System Techniques (MeSH).
- MESH :
- chemical , genetics : Homeodomain Proteins.
- genetics : Arabidopsis, Genes, Plant, Populus, Transcriptome.
- metabolism : Populus.
- physiology : Genes, Plant, Homeodomain Proteins, Populus, Transcriptome.
- Cloning, Molecular, Gene Expression Regulation, Plant, Phylogeny, Real-Time Polymerase Chain Reaction, Salt Stress, Two-Hybrid System Techniques.
Abstract
The three-amino-acid-loop-extension (TALE) transcription factor gene family is widely present in plants and plays an important role in its growth and development. However, studies on the gene family are limited in poplar. In this study, we investigated 35 TALE gene family members in terms of their evolutionary relationship, classification, physicochemical properties, gene structures, and protein motifs. We divided the genes into four classes, based on their protein sequences similarity. The members from each class share similar gene structures and motif compositions. Evidence from transcript profiling indicated that the majority of the TALE genes exhibited distinct expression patterns over leaf, stem, and root tissues. Out of the 35 genes, 17 genes are highly expressed in stems, suggesting that the TALE gene family may play an important role in secondary growth and wood formation. Furthermore, out of the 35 genes, 11 genes are responsive to salt stress, and the spatio-temporal expression patterns of these 11 genes under salt stress were analysed using RT-qPCR. Yeast two-hybridization analysis indicated that poplar TALE proteins from different classes can form heterodimers. These results lay the foundation for future studies on biological functions of poplar TALE genes.
DOI: 10.1016/j.plaphy.2019.01.003
PubMed: 30639784
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Bamboo Research Institute, Nanjing Forestry University, 159 Longpan Road, Nanjing, 210037, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China; Bamboo Research Institute, Nanjing Forestry University, 159 Longpan Road, Nanjing, 210037</wicri:regionArea><wicri:noRegion>210037</wicri:noRegion></affiliation></author><author><name sortKey="Li, Renhua" sort="Li, Renhua" uniqKey="Li R" first="Renhua" last="Li">Renhua Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040</wicri:regionArea><wicri:noRegion>150040</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Tingbo" sort="Jiang, Tingbo" uniqKey="Jiang T" first="Tingbo" last="Jiang">Tingbo Jiang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040</wicri:regionArea><wicri:noRegion>150040</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Boru" sort="Zhou, Boru" uniqKey="Zhou B" first="Boru" last="Zhou">Boru Zhou</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China. Electronic address: boruzhou@yahoo.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040</wicri:regionArea><wicri:noRegion>150040</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant physiology and biochemistry : PPB</title><idno type="eISSN">1873-2690</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (genetics)</term><term>Cloning, Molecular (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genes, Plant (genetics)</term><term>Genes, Plant (physiology)</term><term>Homeodomain Proteins (genetics)</term><term>Homeodomain Proteins (physiology)</term><term>Phylogeny (MeSH)</term><term>Populus (genetics)</term><term>Populus (metabolism)</term><term>Populus (physiology)</term><term>Real-Time Polymerase Chain Reaction (MeSH)</term><term>Salt Stress (MeSH)</term><term>Transcriptome (genetics)</term><term>Transcriptome (physiology)</term><term>Two-Hybrid System Techniques (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arabidopsis (génétique)</term><term>Clonage moléculaire (MeSH)</term><term>Gènes de plante (génétique)</term><term>Gènes de plante (physiologie)</term><term>Phylogenèse (MeSH)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>Populus (physiologie)</term><term>Protéines à homéodomaine (génétique)</term><term>Protéines à homéodomaine (physiologie)</term><term>Réaction de polymérisation en chaine en temps réel (MeSH)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Stress salin (MeSH)</term><term>Techniques de double hybride (MeSH)</term><term>Transcriptome (génétique)</term><term>Transcriptome (physiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Homeodomain Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Genes, Plant</term><term>Populus</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Gènes de plante</term><term>Populus</term><term>Protéines à homéodomaine</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Gènes de plante</term><term>Populus</term><term>Protéines à homéodomaine</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Genes, Plant</term><term>Homeodomain Proteins</term><term>Populus</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cloning, Molecular</term><term>Gene Expression Regulation, Plant</term><term>Phylogeny</term><term>Real-Time Polymerase Chain Reaction</term><term>Salt Stress</term><term>Two-Hybrid System Techniques</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Clonage moléculaire</term><term>Phylogenèse</term><term>Réaction de polymérisation en chaine en temps réel</term><term>Régulation de l'expression des gènes végétaux</term><term>Stress salin</term><term>Techniques de double hybride</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The three-amino-acid-loop-extension (TALE) transcription factor gene family is widely present in plants and plays an important role in its growth and development. However, studies on the gene family are limited in poplar. In this study, we investigated 35 TALE gene family members in terms of their evolutionary relationship, classification, physicochemical properties, gene structures, and protein motifs. We divided the genes into four classes, based on their protein sequences similarity. The members from each class share similar gene structures and motif compositions. Evidence from transcript profiling indicated that the majority of the TALE genes exhibited distinct expression patterns over leaf, stem, and root tissues. Out of the 35 genes, 17 genes are highly expressed in stems, suggesting that the TALE gene family may play an important role in secondary growth and wood formation. Furthermore, out of the 35 genes, 11 genes are responsive to salt stress, and the spatio-temporal expression patterns of these 11 genes under salt stress were analysed using RT-qPCR. Yeast two-hybridization analysis indicated that poplar TALE proteins from different classes can form heterodimers. These results lay the foundation for future studies on biological functions of poplar TALE genes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30639784</PMID><DateCompleted><Year>2019</Year><Month>02</Month><Day>11</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-2690</ISSN><JournalIssue CitedMedium="Internet"><Volume>136</Volume><PubDate><Year>2019</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Plant physiology and biochemistry : PPB</Title><ISOAbbreviation>Plant Physiol Biochem</ISOAbbreviation></Journal><ArticleTitle>Comprehensive analysis of the three-amino-acid-loop-extension gene family and its tissue-differential expression in response to salt stress in poplar.</ArticleTitle><Pagination><MedlinePgn>1-12</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0981-9428(19)30003-8</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.plaphy.2019.01.003</ELocationID><Abstract><AbstractText>The three-amino-acid-loop-extension (TALE) transcription factor gene family is widely present in plants and plays an important role in its growth and development. However, studies on the gene family are limited in poplar. In this study, we investigated 35 TALE gene family members in terms of their evolutionary relationship, classification, physicochemical properties, gene structures, and protein motifs. We divided the genes into four classes, based on their protein sequences similarity. The members from each class share similar gene structures and motif compositions. Evidence from transcript profiling indicated that the majority of the TALE genes exhibited distinct expression patterns over leaf, stem, and root tissues. Out of the 35 genes, 17 genes are highly expressed in stems, suggesting that the TALE gene family may play an important role in secondary growth and wood formation. Furthermore, out of the 35 genes, 11 genes are responsive to salt stress, and the spatio-temporal expression patterns of these 11 genes under salt stress were analysed using RT-qPCR. Yeast two-hybridization analysis indicated that poplar TALE proteins from different classes can form heterodimers. These results lay the foundation for future studies on biological functions of poplar TALE genes.</AbstractText><CopyrightInformation>Copyright © 2019. Published by Elsevier Masson SAS.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Kai</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xuemei</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cheng</LastName><ForeName>Zihan</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yao</LastName><ForeName>Wenjing</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China; Bamboo Research Institute, Nanjing Forestry University, 159 Longpan Road, Nanjing, 210037, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Renhua</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Tingbo</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Boru</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing Road, Harbin, 150040, China. Electronic address: boruzhou@yahoo.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>01</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>France</Country><MedlineTA>Plant Physiol Biochem</MedlineTA><NlmUniqueID>9882449</NlmUniqueID><ISSNLinking>0981-9428</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018398">Homeodomain Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018398" MajorTopicYN="N">Homeodomain Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060888" MajorTopicYN="N">Real-Time Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000077323" MajorTopicYN="N">Salt Stress</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020798" MajorTopicYN="N">Two-Hybrid System Techniques</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Poplar TALE gene family</Keyword><Keyword MajorTopicYN="N">Protein interaction</Keyword><Keyword MajorTopicYN="N">Salt stress</Keyword><Keyword MajorTopicYN="N">Tissue-differential expression</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>10</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>12</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>01</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>1</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>2</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>1</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30639784</ArticleId><ArticleId IdType="pii">S0981-9428(19)30003-8</ArticleId><ArticleId IdType="doi">10.1016/j.plaphy.2019.01.003</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Zhao, Kai" sort="Zhao, Kai" uniqKey="Zhao K" first="Kai" last="Zhao">Kai Zhao</name></noRegion><name sortKey="Cheng, Zihan" sort="Cheng, Zihan" uniqKey="Cheng Z" first="Zihan" last="Cheng">Zihan Cheng</name><name sortKey="Jiang, Tingbo" sort="Jiang, Tingbo" uniqKey="Jiang T" first="Tingbo" last="Jiang">Tingbo Jiang</name><name sortKey="Li, Renhua" sort="Li, Renhua" uniqKey="Li R" first="Renhua" last="Li">Renhua Li</name><name sortKey="Yao, Wenjing" sort="Yao, Wenjing" uniqKey="Yao W" first="Wenjing" last="Yao">Wenjing Yao</name><name sortKey="Zhang, Xuemei" sort="Zhang, Xuemei" uniqKey="Zhang X" first="Xuemei" last="Zhang">Xuemei Zhang</name><name sortKey="Zhou, Boru" sort="Zhou, Boru" uniqKey="Zhou B" first="Boru" last="Zhou">Boru Zhou</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:30639784
|texte= Comprehensive analysis of the three-amino-acid-loop-extension gene family and its tissue-differential expression in response to salt stress in poplar.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:30639784" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |